June 5, 2026

Taxation of Religious Institutions in Uganda: A legal and Practical Analysis

Preamble

Religious institutions occupy a unique position within Uganda’s tax system. Churches, mosques, dioceses, religious foundations, missionary organizations and faith-based charities are established primarily to advance religion, provide humanitarian support, promote education and undertake charitable activities.

Owing to these public-benefit objectives, many religious institutions assume that they are exempt from taxation.

“That assumption is only partly correct”.

Uganda’s tax laws do not grant a blanket exemption to religious institutions. Rather, the Income Tax Act, Cap. 338, the Value Added Tax Act, Cap. 344, the Stamp Duty Act, Cap. 339 and the Tax Procedures Code Act, Cap. 343 impose tax obligations based on the nature of the income earned, transaction undertaken or activity conducted. Consequently, a religious institution may simultaneously enjoy exemption from one tax while remaining liable for another.

The position is best summarized in the words of the Supreme Court in tax jurisprudence that tax exemptions must be expressly granted by law and are construed strictly. Exemption is therefore not presumed merely because an institution pursues religious objectives.

This article examines the taxation of religious institutions in Uganda under the various tax heads and analyses the statutory provisions governing exempt organizations, donations, commercial activities, employment income, rental income, VAT, withholding taxes and stamp duty.

The Legal Status of Religious Institutions under the Income Tax Act

The starting point is the definition of an “exempt organisation” under section 2 of the Income Tax Act.

The Act defines an exempt organisation as a company, institution or irrevocable trust which is:

(a) a religious, charitable, educational or research institution whose object is not for profit; and
(b) has been issued with a written ruling by the Commissioner General currently in force stating that it is an exempt organisation.

This definition is significant for two reasons.

First, not every church, mosque or faith-based organization automatically qualifies as an exempt organization. The institution must satisfy the substantive requirement of being established for non-profit religious or charitable purposes. Secondly, and more importantly, the institution must obtain a written ruling from the Commissioner General recognizing it as an exempt organisation. In practice, therefore, exemption is not self-executing. Religious institutions that have not obtained such recognition may find it difficult to rely on the exemptions available under section 21 of the Income Tax Act.

The requirement for public benefit is further elaborated in URA Practice Notes, which state that a charitable organization must provide public benefit through the relief of poverty, advancement of education, advancement of religion, or other purposes beneficial to the community. URA further states that an institution of public character must provide benefits to the public at large or at least a sufficient section of the community. The advancement of religion therefore constitutes a recognised charitable purpose under Uganda’s tax law.

For the full Analysis: